PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G242400.1
Common NameB456_009G242400, LOC105769820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 440aa    MW: 50866 Da    PI: 7.1975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G242400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067197219123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C+ C    +rk++L+rH+r++
  Gorai.009G242400.1 197 YFCEFCLNFMKRKEQLQRHMRKC 219
                         78*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541601.37E-2247164IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2703.3E-3752123No hitNo description
PfamPF117174.5E-2153111IPR025995RNA binding activity-knot of a chromodomain
CDDcd000241.97E-666112No hitNo description
SMARTSM002981.7E-667126IPR000953Chromo/chromo shadow domain
Gene3DG3DSA:2.30.30.2703.3E-37158208No hitNo description
PROSITE profilePS5172675.469163434IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557292.24E-111164435IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.304.2E-73222365IPR016181Acyl-CoA N-acyltransferase
PfamPF018533.0E-84224401IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00175275333No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010224Biological Processresponse to UV-B
GO:0016573Biological Processhistone acetylation
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043995Molecular Functionhistone acetyltransferase activity (H4-K5 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MGSIDTPTIT ENGSTQSHAA AAPADDNQRP LASSNGAPES EATKKRRSGI LPLEVGTRVM  60
CRWRDGKYHP VKVIERRKLQ STEPSDYEYY VHYTEFNRRL DEWVKLEQLD LDSVETVVDE  120
KVEDKVASLK MTRHQKRKID ETHVEVGHEE LDAASLREHE EFTKVKNIAT IELGRYEIET  180
WYFSPFPPEY NDSLKLYFCE FCLNFMKRKE QLQRHMRKCD LKHPPGDEIY RSGTLSMFEV  240
DGKKNKVYGQ NLCYLAKLFL DHKTLYYDVD LFLFYVLCEC DDRGCHMVGY FSKEKHSEES  300
YNLACILTLP PYQRKGYGKF LIAFSYELSK KEGKVGTPER PLSDLGLLSY RGYWTRVLLD  360
ILKKHKGNIS IKELSDMTAI KAEDILTTLQ SLELIQYRKG QHVICADPKV LDRHLKAAGR  420
GGLEVDVSKL IWTPYKEQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_B1e-1191594381282Histone acetyltransferase KAT8
4dnc_A1e-1191594381282Histone acetyltransferase KAT8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446160.10.0PREDICTED: probable MYST-like histone acetyltransferase 1
SwissprotQ9FLF70.0MYST1_ARATH; Histone acetyltransferase of the MYST family 1
TrEMBLA0A0D2S7E10.0A0A0D2S7E1_G
STRINGVIT_18s0001g04100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM480656
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]